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Showing posts with the label inorganic chemistry

Cisplatin: the First-Line Drug for Nearly All Tumours

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In the recent decade, chemists have taken nature as its inspiration in many ways; one of them is in medicinal chemistry. Many natural products have been screened for their bioactivities to develop new generation of therapeutic agents for 'incurable' diseases such as cancer. However, there is one major drawback from taking natural product as drug. This problem is its complex structure which makes it difficult to synthesise especially in large scale. Anticancer drugs: natural products (paclitaxel) and coordination complex (cisplatin) Luckily, a simple coordination complex, such as cisplatin, gives similar efficacy as natural product-based drug and simple coordination complex is used to treat 80% of all solid cancers. It is noteworthy that the market for this drug is around $1 billion.

The Chemistry Behind the Gifts for the King of Kings

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This time, it is less than a week until Christmas and it is quite appropriate if this time we are digging one of the stories around Christmas, which is the adoration of the magi. The magi, sometimes they are called the wise men or kings, travelled from far east to Bethlehem following the Star of Bethlehem to pay homage to the Infant Jesus. They also brought three gifts to be given to the King of kings: gold, frankincense, and myrrh. This story and the gifts they brought are immortalised in several Christmas carols, one of them is  "We Three Kings " by John Henry Hopkins. We Three Kings  arr. Martin Neary and sung by King's College Choir at 2012 Festival of Nine Lessons and Carols. For lyrics, click here . This time, for Christmas special, we'll see the chemical significance of those gifts for the Infant Jesus.

The Most Noble Complex Compound

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Bartlett's oxidation of Xe using PtF 6   The noble gas compounds have been a great interest since the creation of its kind, XePtF 6 , in 1962. Since then, many xenon compounds with direct bonds to fluorine, oxygen, nitrogen, carbon, xenon itself, and chlorine have been established. However, all these bonded atoms are electronegative main-group elements but there have been several indications that metal-xenon bonds can be formed and detected such as (CO) 5 Mo...Xe. Besides that, The Au-Xe + has been detected by mass spectroscopy and has been calculated with a best estimate for the bond distance of 257 pm. Researchers from Germany successfully created the first metal-xenon square planar compound with direct Au-Xe bond.

+10 Oxidation state, Exist or Not Exist?

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Chemical physicist and spectroscopist C. K. Jørgensen once said that one of the major goals of inorganic chemistry is to prepare compounds of elements in unusual oxidation states. In 2009, the range of oxidation states produced from chemical reaction was -4 to +8, and in 2010 Himmel's group showed that Ir compound with +9 oxidation state, [IrO 4 ] + , exists by electronic structure calculations. In 2014, Wang's group confirmed the existence of the Ir(IX) by matrix-isolation experiments. From these ideas, can it be stretched further? Let say oxidation state +10?

Self-Assembled Metal Cage Complex Catalysis

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Recently, self-assembled metal cage complexes have become new interest in supramolecular chemistry. This new interest is not only in the complex geometry but also in its application as catalyst. The idea of metal cage complex catalyst arises from the fact that it can act as host for small molecules. This means the catalysis happens within the metal cage complex. Besides that, the advantage of using metal cage complex compare to the conventional organic supramolecules is the cavity of the cage can be easily formed by self-assembly process from much simpler components. The predictable geometry of the metal centre helps to design the suitable cavity for the process. To ensure metal cage complex acts as an efficient catalyst, it needs to fulfill certain criteria. Firstly, metal cage complex needs to be able to bind the substrates within the cavity long enough to do the reaction. Besides that, it has to accelerate the substrate reaction, which is the key definition of a catalyst, by inc...

Design and Synthesis of Self-Assembled Metal Cage Complex

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In the late 20th century, Jean-Marie Lehn coined the definition of supramolecular chemistry as " the chemistry of molecular assemblies and of the intermolecular bond ". In this new type of "molecules" the main stabilisation factor is not solely on the covalent chemistry but the intermolecular interactions such as hydrogen bonding and van der Waals interactions. As a side note, Jean-Marie Lehn was awarded the 1987 Nobel Prize in Chemistry with Donald J. Cram and Charles J. Pedersen for " their development and use of molecule with structure-specific interactions of high selectivity ". Donald J. Cram, Jean-Marie Lehn and Charles J. Pedersen (left to right) One of the examples of supramolecular chemistry is self-assembled metal cage complex which has been a great interest recently.

Storage and Transport of Iron in Living Things

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Fe is known as the most abundant metal in the human body and it also comes with variety of functions such as haemoglobin ( O 2 transport in blood), myoglobin ( O 2 storage in muscle), cytochrome c (electron transfer), catalase (metabolism of H 2 O 2 ), and ribonucleotide reductase (transformation of RNA to DNA). Left to right: Haemoglobin, myoglobin, catalase, and ribonucletide reductase However, there are two major problems associated with handling it in biological system. Firstly, in aqueous environment, the stable oxidation state of Fe is Fe(III) which precipitates as the insoluble hydrated oxide [FeO(OH) ] n or rust. Besides that, free iron is also toxic as traces of high-spin Fe(II) generates superoxide radicals and hydroxyl radicals which are highly reactive and damage cells. Therefore, whole process of Fe transport and storage keeps Fe under very close control; concentration of free iron in mammals is around 10 -24 M.

Oxygen-Atom Transfer: Cytochrome P450

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Cytochrome P450 from Pseudomonas putida Cytochrome P450 is another example of metalloproteins that has Fe-porphyrin complex and the name P450 arieses from the absorption maximun of Fe-CO adduct at 450 nm. P450 acts as an oxidising agent and it can oxidise relatively inert and unreactive organic substrates by transfer of a single O atom. This process is known as 'mono-oxygenase' activity and it is essential for both oxidation of natural 'endegenous' products as part of metabolism and oxidation of foreign 'xenobiotic' toxins as part of their destruction. However, this activity is not selective so it can also turn relatively harmless compounds into harmful ones. Furthermore, this such control controlled oxidation of unreactive hydrocarbon under mild conditions is different in synthetic chemistry.

Biocoordination Chemistry: Oxygen Transport

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It is a common misconception that there is a mysterious property of organic compounds that made life possible. The pioneering research by Friedrich Wohler on the conversion ammonium cyanate to urea broke this 'vital force dogma'. In the human body, it contains around 1 kg of essential metals per 75 kg adult, from Ca as the most abundant in the body (1050 g) to some transition metals (mainly the first row transition metals). The transition metal ions are bound in proteins to give metalloproteins. Although the molecules may be complex but principles are familiar from basic coordination chemistry. A metallprotein is just a big coordination complex in which the protein acts as a polydentate ligand, controlling environment around, and behaviour of, metal ion. The main focus for this time is on the oxygen transport system in haemoglobin/myoglobin and haemocyanin. Left to right: haemoglobin, myoglobin, haemocyanin

Ziegler-Natta Polymerisation

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This time, we will see another method of polymerisation which use transition metal complex chemistry in the process. This polymerisation is called Ziegler-Natta (ZN) polymerisation and it is named after German chemist Karl Ziegler and Italian chemist Giulio Natta who developed this polymerisation initially. Ziegler and Natta were awarded 1963 Nobel Prize in chemistry. K. Ziegler (left) and G. Natta (right)

The Chemistry of d- and f- Block: Trends in Stability Constant and The Application of Complex Chemistry

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In this section, we will see the trends in stability constant where the ligands and the metal ions are changed. We will see some patterns that build up this concept about the trends and end up in hard and soft acid base theory. Lastly, in this section we will see how complex chemistry is used in our daily life.

The Chemistry of d- and f- Block: The Chelate Effect

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In this section, we will build up one of the concept of the trend in stability constant where changing the ligands into chelating agent has effect on the stability constant. A chelating agent or a chelate can be defined as polydentate ligand where it has more than 1 attachment point of ligand-metal ion. In this section, we will also see the origin and the physical interpretation of the chelate effect. [M(EDTA ) ] (n-4)+  complex, the chelate effect

The Chemistry of d- and f- Block: Complex Synthesis and Stability Constant

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In this section, we will have a discussion how to make a complex compound through some common methods or reactions such as substitution or redox reaction. Besides that, we will also see some thermodynamics and kinetics aspect in complexation reaction, one of the thermodynamics parameter which will be discussed is the stability constant, K . Lastly, we will also see the pattern of K in complexation reaction with some abnormal cases.

The Chemistry of d- and f- Block: Thermodynamics Consequences of CFSE

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In this section, we will build up again the concept of CFSE as we will look the consequences over CFSE into some observable values, such as hydration enthalpy of  M 2+  and ionic radius of  M 2+  ions. Besides that, we can also determine from the value of  Δ o  from hydration enthalpy. In this section also, we will look how CFSE could be used to predict the geometry of coordinated complex to be a tetrahedral or a octahedral complex.

The Chemistry of d- and f- Block: The Absorption Spectrum of Complex Compounds

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In this section, we will have a discussion for one of the consequences of crystal splitting (CFSE) stabilisation energy which is observed in a spectrum. In this section, we will explain some unique characteristics of complex compound's absorption spectrum. Furthermore, we will also see Jahn-Teller distortion which gives the unique pattern of absorption spectrum of a complex compound.

The Chemistry of d- and f- Block: The Origin of Colour in Complexes, Magnetism, and Isomerism

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In this section, we will have a discussion about the consequences of crystal field theory  which is the colour in complexes and magnetism. In this discussion, the crystal field theory will rationalise the origin of both properties. Furthermore, the geometry of complexes could also form the isomerism which can give different characters of complexes.

The Chemistry of d- and f- Block: Crystal Field Theory

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In this section we will build up our understanding in d -block complex compounds by looking the bonding in complex compounds. One of the approach is by using the crystal field theory which can derive some important properties of complexes. Then, we will see some factors that affect the crystal field splitting such as the ligands and the metal centre ion.

The Chemistry of d- and f- Block: Introduction to d- and f- Block, and Complex Chemistry

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In this section, we will have a discussion about the d - and f-b lock chemistry which in this part is the introduction about d - and f - block elements and compounds. The elements of d-  and f- block in this section will include the definition of transition metal or d- block element and how the pattern is fit on the periodic table. Besides that, for the compounds of d - and f- block will mainly discuss about the complex compounds. d - and f -block elements

The Chemistry of Water

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In this section we will have a brief overview about one of the important ingredients of life, which is water ( H 2 O ). We will have a discussion around the properties of water and some anomalous properties of water. Lastly, we will have a brief look about the latest technology to address the problem about clean water.

Fundamentals of Molecular Bonding: Hybridisation and Molecular Orbital Theory

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In this section, we will have a discussion about the covalent bonding in a molecule from two point of view, hybridisation and molecular orbital (MO) theory. In this section we will have a discussion about the hybridisation related to some fundamental geometries and in MO theory, we will see how to construct a simple MO for diatomic molecule. This section is a continuity from previous discussion about VSEPR (see A Quick Guide to VSEPR ). From VSEPR calculations help to predict shape of molecules but tell us nothing about the bonding. Once we know the shape of a molecule, we can think about how the atoms are held together, as the nature of bonding, and there is more than one way to do this. The first point of view is the bonding as the localised models, a bond involves overlap of two orbitals on adjacent atoms (hybridisation). In the other hands, the molecular bonding can be seen as delocalised models, a bond involves orbitals spread over the whole molecule (MO theory).